Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
OOM71295.1Hypothetical protein. (526 aa)    
Predicted Functional Partners:
tycC_2
Tyrocidine synthase 3.
  
 
  0.906
gltB_1
Ferredoxin-dependent glutamate synthase 1.
    
  0.827
grsB_3
Gramicidin S synthase 2.
  
 
 0.820
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
  0.784
OOM71294.1
Hypothetical protein.
       0.773
grsB_4
Gramicidin S synthase 2; Belongs to the ATP-dependent AMP-binding enzyme family.
  
 
  0.766
lgrD_2
Linear gramicidin synthase subunit D.
  
 
  0.766
nifJ_1
Pyruvate-flavodoxin oxidoreductase.
   
  0.764
nifJ_2
Pyruvate-flavodoxin oxidoreductase.
   
  0.764
yitJ
Bifunctional homocysteine S-methyltransferase/5,10-methylenetetrahydrofolate reductase.
    
  0.757
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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