Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lon2_2Lon protease 2. (631 aa)    
Predicted Functional Partners:
nrnA_2
Bifunctional oligoribonuclease and PAP phosphatase NrnA; Has phosphodiesterase (PDE) activity against cyclic-di-AMP (c-di-AMP); Belongs to the GdpP/PdeA phosphodiesterase family.
       0.768
rplI
50S ribosomal protein L9; Binds to the 23S rRNA.
       0.768
OOM71269.1
MazG-like family protein.
       0.709
OOM80999.1
Stage III sporulation protein SpoAB.
  
    0.658
OOM74719.1
Hypothetical protein.
  
     0.560
yabG
Sporulation-specific protease YabG.
  
     0.557
OOM81053.1
YtxC-like family protein.
  
    0.551
OOM80997.1
Stage III sporulation protein AC/AD protein family protein.
  
    0.542
spoVB_2
Stage V sporulation protein B.
  
     0.542
OOM71814.1
Hypothetical protein.
  
     0.537
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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