Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OOM74078.1 | kynB_1 | CLPUN_41390 | CLPUN_16750 | Hypothetical protein. | Kynurenine formamidase. | 0.739 |
OOM74078.1 | yccS | CLPUN_41390 | CLPUN_50220 | Hypothetical protein. | Inner membrane protein YccS. | 0.437 |
OOM82363.1 | racX | CLPUN_02630 | CLPUN_09850 | Hypothetical protein. | Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. | 0.480 |
OOM82363.1 | yccS | CLPUN_02630 | CLPUN_50220 | Hypothetical protein. | Inner membrane protein YccS. | 0.701 |
flgG_1 | flgG_2 | CLPUN_34810 | CLPUN_34820 | Flagellar basal-body rod protein FlgG. | Flagellar basal-body rod protein FlgG. | 0.994 |
flgG_1 | yccS | CLPUN_34810 | CLPUN_50220 | Flagellar basal-body rod protein FlgG. | Inner membrane protein YccS. | 0.695 |
flgG_2 | flgG_1 | CLPUN_34820 | CLPUN_34810 | Flagellar basal-body rod protein FlgG. | Flagellar basal-body rod protein FlgG. | 0.994 |
flgG_2 | yccS | CLPUN_34820 | CLPUN_50220 | Flagellar basal-body rod protein FlgG. | Inner membrane protein YccS. | 0.695 |
iscU | racX | CLPUN_10790 | CLPUN_09850 | Iron-sulfur cluster assembly scaffold protein IscU. | Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. | 0.480 |
iscU | yccS | CLPUN_10790 | CLPUN_50220 | Iron-sulfur cluster assembly scaffold protein IscU. | Inner membrane protein YccS. | 0.701 |
kynB_1 | OOM74078.1 | CLPUN_16750 | CLPUN_41390 | Kynurenine formamidase. | Hypothetical protein. | 0.739 |
kynB_1 | yccS | CLPUN_16750 | CLPUN_50220 | Kynurenine formamidase. | Inner membrane protein YccS. | 0.466 |
nadK | pheT | CLPUN_11440 | CLPUN_12050 | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | 0.497 |
nadK | yccS | CLPUN_11440 | CLPUN_50220 | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | Inner membrane protein YccS. | 0.464 |
pheT | nadK | CLPUN_12050 | CLPUN_11440 | phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | NAD kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP. | 0.497 |
pheT | yccS | CLPUN_12050 | CLPUN_50220 | phenylalanine--tRNA ligase beta subunit; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily. | Inner membrane protein YccS. | 0.748 |
racX | OOM82363.1 | CLPUN_09850 | CLPUN_02630 | Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. | Hypothetical protein. | 0.480 |
racX | iscU | CLPUN_09850 | CLPUN_10790 | Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. | Iron-sulfur cluster assembly scaffold protein IscU. | 0.480 |
racX | yccS | CLPUN_09850 | CLPUN_50220 | Putative amino-acid racemase; Belongs to the aspartate/glutamate racemases family. | Inner membrane protein YccS. | 0.617 |
slyA_5 | yccS | CLPUN_50230 | CLPUN_50220 | Transcriptional regulator SlyA. | Inner membrane protein YccS. | 0.812 |
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