Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM71091.1Hypothetical protein. (119 aa)    
Predicted Functional Partners:
OOM71090.1
Bacteriophage Gp15 protein.
       0.829
OOM71089.1
Hypothetical protein.
       0.654
OOM71092.1
Hypothetical protein.
       0.636
OOM71088.1
Phage tail protein.
       0.500
OOM71087.1
Prophage endopeptidase tail.
       0.488
OOM71086.1
Hypothetical protein.
       0.436
OOM71084.1
Hypothetical protein.
       0.429
OOM71085.1
Hypothetical protein.
       0.429
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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