STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
OOM71106.1Phage tail sheath protein. (373 aa)    
Predicted Functional Partners:
OOM71098.1
Hypothetical protein.
 
 
 0.983
OOM81798.1
Hypothetical protein.
 
 
 0.978
OOM71102.1
Hypothetical protein.
 
 
 0.976
OOM82337.1
Hypothetical protein.
 
 
 0.970
OOM71097.1
Baseplate J-like protein.
 
 
 0.967
OOM72927.1
Hypothetical protein.
 
 
 0.963
OOM72924.1
Bacterial SH3 domain protein.
 
 
 0.961
OOM81799.1
Baseplate J-like protein.
 
 
 0.960
OOM72928.1
Baseplate J-like protein.
 
 
 0.960
OOM71096.1
Hypothetical protein.
 
 
 0.958
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.