Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
OOM70744.1Hypothetical protein. (103 aa)    
Predicted Functional Partners:
barA_3
Signal transduction histidine-protein kinase BarA.
  
 
 0.968
barA_4
Signal transduction histidine-protein kinase BarA.
  
 
 0.968
evgS
Sensor protein EvgS precursor.
  
 
 0.968
rsbV
anti-sigma-B factor antagonist; Belongs to the anti-sigma-factor antagonist family.
  
 0.962
OOM70745.1
Hypothetical protein.
     0.961
luxQ_2
Autoinducer 2 sensor kinase/phosphatase LuxQ.
  
 
 0.924
cqsS_1
CAI-1 autoinducer sensor kinase/phosphatase CqsS.
  
 
 0.919
spoIIAB_1
Anti-sigma F factor.
  
 0.905
spoIIAB_2
Anti-sigma F factor; Binds to sigma F and blocks its ability to form an RNA polymerase holoenzyme (E-sigma F). Phosphorylates SpoIIAA on a serine residue. This phosphorylation may enable SpoIIAA to act as an anti- anti-sigma factor that counteracts SpoIIAB and thus releases sigma F from inhibition.
  
 0.905
barA_1
Signal transduction histidine-protein kinase BarA.
  
 
 0.887
Your Current Organism:
Clostridium puniceum
NCBI taxonomy Id: 29367
Other names: ATCC 43978, C. puniceum, DSM 2619, ICMP 12529, NCIB 11596, NCIB:11596, NCIMB 11596, strain BL 70/20
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