STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0048PFAM: SNARE associated Golgi protein; KEGG: cac:CAC0677 hypothetical protein. (210 aa)    
Predicted Functional Partners:
Amet_1654
PFAM: SNARE associated Golgi protein; KEGG: vfi:VFA0098 transporter.
  
     0.772
Amet_1442
PFAM: phospholipid/glycerol acyltransferase; KEGG: cno:NT01CX_1393 1-acyl-sn-glycerol-3-phosphate acyltransferase, putative.
    
 
 0.735
Amet_0261
PFAM: cobalamin adenosyltransferase; KEGG: ctc:CTC02171 ethanolamine utilization protein.
      
 0.717
Amet_1296
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: lwe:lwe2036 cold shock-like protein.
      
 0.710
Amet_1627
PFAM: Cold-shock protein, DNA-binding; SMART: Cold shock protein; KEGG: efa:EF1367 cold-shock domain family protein.
      
 0.710
Amet_3295
KEGG: dde:Dde_0759 extracellular solute-binding protein, putative.
 
  
 0.579
Amet_3268
PFAM: SNARE associated Golgi protein; KEGG: ljo:LJ0674 hypothetical protein.
 
     0.488
Amet_3298
PFAM: protein of unknown function DUF224, cysteine-rich region domain protein; KEGG: cpr:CPR_2072 cysteine-rich domain protein.
 
   
 0.479
Amet_0047
PFAM: UBA/THIF-type NAD/FAD binding protein; MoeZ/MoeB domain protein; KEGG: sus:Acid_0749 UBA/ThiF-type NAD/FAD binding protein.
       0.473
Amet_3290
SMART: Rhodanese domain protein; KEGG: ppr:PBPRA1240 putative thiosulfate sulfur transferase.
 
    0.457
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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