STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0050SMART: regulatory protein, AsnC/Lrp family; KEGG: mta:Moth_2198 putative transcriptional regulator, AsnC family. (152 aa)    
Predicted Functional Partners:
Amet_0051
PFAM: Radical SAM domain protein; KEGG: chy:CHY_1211 radical SAM domain protein.
  
 0.995
Amet_0049
KEGG: mta:Moth_2197 putative transcriptional regulator, AsnC family.
    
0.988
Amet_0052
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: dsy:DSY2223 hypothetical protein.
  
 0.966
Amet_0061
TIGRFAM: uroporphyrin-III C-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Uroporphyrinogen III synthase HEM4; KEGG: dsy:DSY2224 hypothetical protein.
 
  
 0.730
Amet_3397
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cac:CAC1673 large subunit of NADH-dependent glutamate synthase.
     
 0.708
Amet_1039
PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; Tetratricopeptide domain protein; KEGG: cth:Cthe_0533 radical SAM.
  
 0.630
Amet_0059
TIGRFAM: siroheme synthase; KEGG: gka:GK0404 siroheme synthase.
 
   
 0.517
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.