Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amet_0126 | Amet_0127 | Transposase; KEGG: swo:Swol_2198 transposase. | PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase. | 0.622 |
Amet_0126 | Amet_0128 | Transposase; KEGG: swo:Swol_2198 transposase. | Hypothetical protein. | 0.420 |
Amet_0127 | Amet_0126 | PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase. | Transposase; KEGG: swo:Swol_2198 transposase. | 0.622 |
Amet_0127 | Amet_0128 | PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase. | Hypothetical protein. | 0.515 |
Amet_0128 | Amet_0126 | Hypothetical protein. | Transposase; KEGG: swo:Swol_2198 transposase. | 0.420 |
Amet_0128 | Amet_0127 | Hypothetical protein. | PFAM: protein of unknown function DUF1568; KEGG: tte:TTE2528 predicted transposase. | 0.515 |
Amet_0128 | Amet_0129 | Hypothetical protein. | PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family. | 0.433 |
Amet_0128 | Amet_0130 | Hypothetical protein. | Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein. | 0.418 |
Amet_0129 | Amet_0128 | PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family. | Hypothetical protein. | 0.433 |
Amet_0129 | Amet_0130 | PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family. | Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein. | 0.950 |
Amet_0130 | Amet_0128 | Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein. | Hypothetical protein. | 0.418 |
Amet_0130 | Amet_0129 | Heavy metal translocating P-type ATPase; TIGRFAM: ATPase, P-type (transporting), HAD superfamily, subfamily IC; cadmium-translocating P-type ATPase; heavy metal translocating P-type ATPase; PFAM: Haloacid dehalogenase domain protein hydrolase; Heavy metal transport/detoxification protein; E1-E2 ATPase-associated domain protein; KEGG: dsy:DSY0829 hypothetical protein. | PFAM: regulatory protein, ArsR; KEGG: cth:Cthe_0245 transcriptional regulator, ArsR family. | 0.950 |