STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0211KEGG: bad:BAD_1383 hypothetical protein. (369 aa)    
Predicted Functional Partners:
Amet_0212
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; KEGG: dps:DPPB80 related to F420H2-dehydrogenase, beta subunit.
     0.991
Amet_0209
PFAM: glycosyl transferase, group 1; KEGG: pac:PPA0673 putative glycosyl transferase group 1.
  
  
 0.719
Amet_0210
PFAM: O-antigen polymerase; KEGG: bsu:BG12692 biosynthesis of teichuronic acid, polymerization.
       0.712
Amet_0208
KEGG: cth:Cthe_2340 UDP-glucose/GDP-mannose dehydrogenase.
       0.635
Amet_0201
PFAM: sugar transferase; KEGG: bha:BH3716 galactosyltransferase.
 
  
 0.534
Amet_0205
PFAM: glycosyl transferase, group 1; KEGG: pab:PAB1604 LPS biosynthesis RfbU related protein.
  
  
 0.432
Amet_3492
Sulfate adenylyltransferase, large subunit; May be the GTPase, regulating ATP sulfurylase activity. Belongs to the TRAFAC class translation factor GTPase superfamily. Classic translation factor GTPase family. CysN/NodQ subfamily.
     
 0.430
Amet_0207
PFAM: UDP-N-acetylglucosamine 2-epimerase; KEGG: spn:SP_0357 UDP-N-acetylglucosamine-2-epimerase; Belongs to the UDP-N-acetylglucosamine 2-epimerase family.
       0.426
Amet_0206
PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP-glucose/GDP-mannose dehydrogenase, dimerisation; UDP-glucose/GDP-mannose dehydrogenase-like; KEGG: cpf:CPF_0468 UDP-glucose/GDP-mannose dehydrogenase family; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
       0.406
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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