STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0221TIGRFAM: DNA protecting protein DprA; PFAM: SMF family protein; KEGG: cth:Cthe_0459 DNA protecting protein DprA. (378 aa)    
Predicted Functional Partners:
Amet_0220
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; KEGG: tte:TTE1455 predicted ATPase with chaperone activity.
 
 0.959
Amet_0723
PFAM: phosphoribosyltransferase; KEGG: swo:Swol_0188 phosphoribosyltransferase.
 
 
 0.840
Amet_2737
TIGRFAM: Mg chelatase, subunit ChlI; PFAM: magnesium chelatase, ChlI subunit; ATPase associated with various cellular activities, AAA_5; SMART: AAA ATPase; KEGG: cth:Cthe_0455 Mg chelatase, subunit ChlI.
 
 0.840
Amet_3058
PFAM: ComEC/Rec2-related protein; KEGG: tte:TTE0941 predicted hydrolases of metallo-beta-lactamase fold.
 
  
 0.837
Amet_3475
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
  
  
 0.636
Amet_2710
CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
  
    0.610
Amet_2739
PFAM: protein of unknown function UPF0102; KEGG: cac:CAC1763 predicted endonuclease; Belongs to the UPF0102 family.
 
    0.583
Amet_2351
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase, RecJ domain protein; phosphoesterase, DHHA1; KEGG: cth:Cthe_1346 single-stranded-DNA-specific exonuclease RecJ.
 
   
 0.575
Amet_3482
PFAM: type II secretion system protein E; General secretory system II, protein E domain protein; SMART: AAA ATPase; KEGG: tte:TTE1262 predicted ATPases involved in pili biogenesis, PilB homologs.
  
  
 0.563
recR
Recombination protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.558
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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