STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0269PFAM: iron-containing alcohol dehydrogenase; KEGG: ctc:CTC02182 alcetaldehyde dehydrogenase or NADPH-dependent butanol dehydrogenase. (391 aa)    
Predicted Functional Partners:
Amet_0259
TIGRFAM: acetaldehyde dehydrogenase (acetylating); KEGG: dde:Dde_3279 aldehyde dehydrogenase, putative.
 
 0.986
Amet_3824
TIGRFAM: acetaldehyde dehydrogenase (acetylating); PFAM: aldehyde dehydrogenase; KEGG: ctc:CTC01441 acetaldehyde dehydrogenase (acetylating).
 
 0.983
Amet_1676
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
  
  
 0.643
Amet_4338
TIGRFAM: succinic semialdehyde dehydrogenase; PFAM: aldehyde dehydrogenase; KEGG: bha:BH3316 succinate-semialdehyde dehydrogenase.
 
 
 0.624
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
  
  
 0.602
Amet_0948
KEGG: hha:Hhal_1920 hypothetical protein.
  
 
 0.555
Amet_2051
KEGG: bha:BH2072 hypothetical protein.
  
 
 0.555
Amet_0268
PFAM: Ethanolamine utilisation protein, EutH; KEGG: lin:lin1150 similar to ethanolamine utilization protein EutH - Escherichia coli.
     
 0.537
glgA
Glycogen/starch synthase, ADP-glucose type; Synthesizes alpha-1,4-glucan chains using ADP-glucose.
   
    0.534
Amet_0265
PFAM: Ethanolamine utilization protein EutN/carboxysome structural protein Ccml; KEGG: dde:Dde_3273 ethanolamine utilization protein EutN.
  
  
 0.476
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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