STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0391Hypothetical protein. (75 aa)    
Predicted Functional Partners:
Amet_0389
Uncharacterized ATPase putative transposase; KEGG: cjr:CJE0269 bacteriophage DNA transposition protein B, putative.
       0.773
Amet_0390
Hypothetical protein.
       0.773
Amet_0392
Hypothetical protein.
       0.773
Amet_0393
Transcriptional regulator/antitoxin, MazE; PFAM: SpoVT/AbrB domain protein; KEGG: swo:Swol_0047 transcription regulator AbrB.
       0.773
Amet_0394
Hypothetical protein.
       0.773
Amet_0388
PFAM: Transposase-like, Mu-like; KEGG: bcz:pE33L466_0072 transposase.
       0.732
Amet_0395
Hypothetical protein.
       0.615
Amet_0396
Hypothetical protein.
       0.615
Amet_0397
Hypothetical protein.
       0.462
Amet_0398
RNA polymerase, sigma 28 subunit, FliA/WhiG family; TIGRFAM: RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; KEGG: cpr:CPR_1733 RNA polymerase sigma-E factor.
       0.462
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.