STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0480PFAM: 1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase; KEGG: tte:TTE0770 NCAIR mutase (PurE)-related proteins. (250 aa)    
Predicted Functional Partners:
Amet_0482
PFAM: ExsB family protein; KEGG: chy:CHY_1281 conserved hypothetical protein TIGR00268.
 
 0.997
larC
Protein of unknown function DUF111; Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2+), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor-dependent enzymes. Belongs to the LarC family.
 
  
 0.988
Amet_3746
KEGG: cac:CAC0769 hypothetical protein.
 
  
 0.844
Amet_0564
KEGG: dsy:DSY3881 hypothetical protein.
 
  
 0.836
Amet_0538
KEGG: dsy:DSY3881 hypothetical protein.
 
  
 0.822
Amet_3891
KEGG: dsy:DSY3881 hypothetical protein.
 
  
 0.822
Amet_0523
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: tde:TDE2131 cobalamin biosynthesis protein CbiM, putative.
  
    0.769
Amet_2172
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dar:Daro_2825 PAS:GGDEF.
 
      0.724
Amet_1651
KEGG: hwa:HQ2306A ABC-type cobalt transport system, permease protein I.
  
    0.602
Amet_0907
PFAM: aldo/keto reductase; KEGG: cth:Cthe_0236 aldo/keto reductase.
 
    0.449
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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