STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0541PFAM: Peptidoglycan-binding domain 1 protein; Peptidoglycan-binding LysM; KEGG: tte:TTE2219 LysM-repeat proteins and domains. (320 aa)    
Predicted Functional Partners:
Amet_1236
PFAM: Peptidoglycan-binding domain 1 protein; ErfK/YbiS/YcfS/YnhG family protein; KEGG: swo:Swol_1663 ErfK/YbiS/YcfS/YnhG.
  
 0.522
Amet_0540
PFAM: Pyridoxal-5'-phosphate-dependent protein, beta subunit; KEGG: tac:Ta0113 probable threonine dehydratase, biodegradative.
  
    0.496
Amet_0542
5'-Nucleotidase domain protein; PFAM: Peptidoglycan-binding LysM; metallophosphoesterase; 5'-Nucleotidase domain protein; KEGG: bld:BLi00814 similar to 2',3'-cyclic-nucleotide 2'-phosphodiesterase; RBL02320; Belongs to the 5'-nucleotidase family.
  
  
 0.460
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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