STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0551PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: oih:OB0242 C4-dicarboxylate transport system permease small protein. (171 aa)    
Predicted Functional Partners:
Amet_0552
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msu:MS0528 hypothetical protein.
 
 
 0.967
Amet_3728
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: sil:SPO1146 TRAP dicarboxylate transporter, DctQ subunit.
  
  
  0.930
Amet_0550
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctP.
 
  
 0.909
Amet_0971
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit.
 
 
 0.856
Amet_0560
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit.
 
 
 0.855
Amet_1290
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: mta:Moth_0424 TRAP dicarboxylate transporter-DctM subunit.
 
 
 0.854
Amet_3531
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oih:OB0241 C4-dicarboxylate transport system permease large protein.
 
 
 0.850
Amet_3786
TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: msm:MSMEG_6845 trap dicarboxylate transporter, DctM subunit.
 
 
 0.835
Amet_1288
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter, DctP subunit.
 
  
 0.827
Amet_0969
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein.
 
  
 0.824
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.