STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0614PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein. (120 aa)    
Predicted Functional Partners:
Amet_2698
CheA signal transduction histidine kinase; PFAM: CheW domain protein; ATP-binding region, ATPase domain protein; Signal transducing histidine kinase, homodimeric; Hpt domain protein; P2 response regulator binding domain protein; KEGG: cth:Cthe_0490 CheA signal transduction histidine kinases.
 
 0.989
Amet_2696
CheC, inhibitor of MCP methylation; PFAM: CheC domain protein; KEGG: tte:TTE1415 Chemotaxis protein CheC, inhibitor of MCP methylation.
 
 0.987
Amet_2710
CheC, inhibitor of MCP methylation; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
 
 0.982
Amet_0613
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: tte:TTE1429 chemotaxis protein CheC, inhibitor of MCP methylation.
  
 
  0.954
Amet_0247
PFAM: CheC domain protein; KEGG: cac:CAC0586 CheX protein (uncharacterized ORF in chemotaxis operon).
  
 
 0.912
Amet_2709
PFAM: response regulator receiver; KEGG: cth:Cthe_0479 response regulator receiver protein.
 
  
0.903
Amet_2943
PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC01857 methyl-accepting chemotaxis protein.
 
 
  0.862
Amet_3754
PFAM: histidine kinase, HAMP region domain protein; Cache domain protein; chemotaxis sensory transducer; KEGG: ctc:CTC00924 methyl-accepting chemotaxis protein.
 
 
  0.847
Amet_3777
PFAM: histidine kinase, HAMP region domain protein; chemotaxis sensory transducer; KEGG: cac:CAC3397 membrane associated methyl-accepting chemotaxis protein (with HamP domain).
 
 
  0.846
cheD
CheD; Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis; Belongs to the CheD family.
 
    0.828
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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