STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0710KEGG: cth:Cthe_1229 spore germination protein-like protein. (186 aa)    
Predicted Functional Partners:
Amet_0709
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region, ATPase domain protein; histidine kinase, HAMP region domain protein; histidine kinase A domain protein; KEGG: tte:TTE0482 sensory transduction histidine kinase.
 
  
 0.653
Amet_0695
Hypothetical protein.
  
     0.609
Amet_1299
KEGG: tte:TTE2431 hypothetical protein.
 
     0.539
Amet_0708
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE0481 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
       0.534
Amet_2327
Hypothetical protein; KEGG: cth:Cthe_2543 spore germination protein-like protein.
  
     0.520
Amet_1651
KEGG: hwa:HQ2306A ABC-type cobalt transport system, permease protein I.
  
     0.477
Amet_0955
KEGG: cth:Cthe_0187 hypothetical protein.
  
     0.456
Amet_2487
KEGG: tte:TTE1271 hypothetical protein.
  
     0.447
Amet_0711
PFAM: Auxin Efflux Carrier; KEGG: mhu:Mhun_1778 auxin efflux carrier.
       0.435
Amet_0192
PFAM: lipopolysaccharide biosynthesis protein; KEGG: cth:Cthe_2347 lipopolysaccharide biosynthesis.
  
     0.432
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.