STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0712PFAM: S-layer domain protein; Lytic transglycosylase, catalytic; KEGG: dsy:DSY3348 hypothetical protein. (409 aa)    
Predicted Functional Partners:
Amet_2201
PFAM: S-layer domain protein; KEGG: cth:Cthe_2809 glycoside hydrolase, family 16.
  
 
 0.812
Amet_0191
PFAM: S-layer domain protein; KEGG: sth:STH3168 S-layer associated protein, putataive.
  
   
 0.755
Amet_1556
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 efflux transporter, RND family, MFP subunit.
 
 
 0.753
Amet_1340
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cno:NT01CX_1548 HlyD family secretion protein, putative.
 
 
 0.746
Amet_0178
PFAM: S-layer domain protein; KEGG: cth:Cthe_2384 S-layer-like domain containing protein.
 
   
 0.739
Amet_0600
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: dsy:DSY1327 hypothetical protein.
 
 
 0.739
Amet_0187
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.735
Amet_1521
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
 
 0.724
Amet_3685
PFAM: S-layer domain protein; glycoside hydrolase, family 18; SMART: chitinase II; KEGG: swo:Swol_0141 hypothetical protein.
  
     0.718
Amet_4171
PFAM: S-layer domain protein; KEGG: mta:Moth_2341 hypothetical protein.
  
   
 0.713
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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