STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hpfSigma 54 modulation protein/ribosomal protein S30EA; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth. (177 aa)    
Predicted Functional Partners:
rpmC
PFAM: ribosomal protein L29; KEGG: tte:TTE2284 ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.
  
 
 
 0.898
rpsU
PFAM: ribosomal protein S21; KEGG: cpr:CPR_1995 ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
   
 
 0.881
rpmA
PFAM: ribosomal protein L27; KEGG: ctc:CTC02058 LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.
   
 
 0.873
rpsI
PFAM: ribosomal protein S9; KEGG: cth:Cthe_1782 ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
   
 
 0.873
rpmH
PFAM: ribosomal protein L34; KEGG: cac:CAC3739 50S ribosomal protein L34; Belongs to the bacterial ribosomal protein bL34 family.
   
 
 0.870
rplO
Ribosomal protein L15; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.
   
 
 0.861
rpsE
Ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
   
 
 0.861
rplI
Ribosomal protein L9; Binds to the 23S rRNA.
  
   0.861
rpsP
PFAM: ribosomal protein S16; KEGG: tte:TTE1461 ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family.
    
 
 0.860
rplJ
Ribosomal protein L10; Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors. Belongs to the universal ribosomal protein uL10 family.
 
 
 
 0.858
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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