STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_0971TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: C4-dicarboxylate anaerobic carrier; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: fnu:FN1256 C4-dicarboxylate transporter large subunit. (428 aa)    
Predicted Functional Partners:
Amet_0970
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit.
 
 
 0.929
Amet_0969
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein.
 
  
 0.888
Amet_3533
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: bha:BH2673 C4-dicarboxylate transport system (C4-dicarboxylate-binding protein).
  
 0.888
Amet_3532
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: dsy:DSY4744 hypothetical protein.
 
 
 0.858
Amet_0551
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: oih:OB0242 C4-dicarboxylate transport system permease small protein.
 
 
 0.856
Amet_1289
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: mta:Moth_0423 tripartite ATP-independent periplasmic transporter, DctQ component.
 
 
 0.849
Amet_0550
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: rsp:RSP_1605 TRAP-T family transporter, periplasmic binding protein, DctP.
  
 0.837
Amet_0559
PFAM: Tripartite ATP-independent periplasmic transporter, DctQ component; KEGG: fnu:FN1257 C4-dicarboxylate transporter small subunit.
 
 
 0.820
Amet_0558
PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: fnu:FN1258 C4-dicarboxylate-binding protein.
  
 0.803
Amet_1288
TIGRFAM: TRAP dicarboxylate transporter, DctP subunit; PFAM: TRAP dicarboxylate transporter- DctP subunit; KEGG: mta:Moth_0422 TRAP dicarboxylate transporter, DctP subunit.
  
 0.803
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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