STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1151Conserved hypothetical protein; KEGG: cac:CAC3379 uncharacterized protein, YQFW B.subtilis homolog; Belongs to the 5'(3')-deoxyribonucleotidase family. (199 aa)    
Predicted Functional Partners:
Amet_1150
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR, HTH; UbiC transcription regulator-associated domain protein; KEGG: oih:OB0967 transcriptional regulator.
 
    0.645
Amet_3677
PFAM: metallophosphoesterase; KEGG: cno:NT01CX_1367 predicted phoshohydrolase.
      0.630
Amet_0561
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: fnu:FN1891 glycerophosphoryl diester phosphodiesterase.
   
    0.479
Amet_2820
PFAM: glycerophosphoryl diester phosphodiesterase; KEGG: sth:STH2737 glycerophosphodiester phosphodiesterase.
   
    0.479
Amet_1152
KEGG: oih:OB0968 hypothetical protein.
       0.420
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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