STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
uxaCPFAM: Glucuronate isomerase; KEGG: sha:SH2648 hypothetical protein. (475 aa)    
Predicted Functional Partners:
uxaB
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: cac:CAC0695 altronate oxidoreductase; Belongs to the mannitol dehydrogenase family. UxaB subfamily.
 
 
 0.987
uxuA
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.986
Amet_1293
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase.
 
 
 0.986
Amet_3783
PFAM: Mannitol dehydrogenase, C-terminal domain; Mannitol dehydrogenase rossman, N-terminal domain; KEGG: mta:Moth_0429 mannitol dehydrogenase.
 
 
 0.975
uxuA-2
Mannonate dehydratase; Catalyzes the dehydration of D-mannonate.
 
  
 0.964
Amet_0556
PFAM: D-galactarate dehydratase/Altronate hydrolase domain protein; SAF domain; KEGG: cac:CAC0696 putative altronate dehydratase.
  
 0.939
Amet_3317
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase, family 43; KEGG: oih:OB3125 xylan 1,4-beta-xylosidase; Belongs to the glycosyl hydrolase 43 family.
 
  
 0.871
Amet_1261
TIGRFAM: 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase; PFAM: KDPG and KHG aldolase; KEGG: cno:NT01CX_1477 2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase, putative.
 
   
 0.775
Amet_1262
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
 
   
 0.734
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
  
 0.726
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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