STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1298PFAM: beta-lactamase domain protein; KEGG: tte:TTE2430 predicted hydrolase of metallo-beta-lactamase fold. (404 aa)    
Predicted Functional Partners:
Amet_3058
PFAM: ComEC/Rec2-related protein; KEGG: tte:TTE0941 predicted hydrolases of metallo-beta-lactamase fold.
   
 0.935
Amet_1299
KEGG: tte:TTE2431 hypothetical protein.
 
     0.813
Amet_1297
KEGG: oih:OB1065 hypothetical protein.
       0.501
Amet_2662
PFAM: cell division protein FtsK/SpoIIIE SMART: AAA ATPase; KEGG: ctc:CTC01286 putative stage III sporulation protein E.
 
  
 0.466
cinA
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cac:CAC3586 competence-damage inducible protein, CINA; Belongs to the CinA family.
      
 0.432
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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