STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1367TIGRFAM: Spore cortex-lytic enzyme SleB; PFAM: Peptidoglycan-binding domain 1 protein; cell wall hydrolase, SleB; KEGG: sth:STH2958 spore cortex-lytic enzyme precursor. (227 aa)    
Predicted Functional Partners:
Amet_1368
TIGRFAM: Spore germination YpeB; PFAM: Propeptide, PepSY amd peptidase M4; KEGG: cth:Cthe_2416 propeptide, PepSY amd peptidase M4.
 
  
 0.973
Amet_2872
Peptidase U4, sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
  
   
 0.612
Amet_1366
Magnesium transporter; Acts as a magnesium transporter.
       0.584
gpr
Spore protease; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
    0.580
Amet_2220
PFAM: Stage V sporulation AD family protein; KEGG: tte:TTE1320 spore formation protein spoVAD.
  
  
 0.526
Amet_1284
PFAM: spore germination B3 GerAC family protein; KEGG: dsy:DSY4477 hypothetical protein.
 
  
 0.523
Amet_4495
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma-H type; RNA polymerase sigma-70; PFAM: sigma-70 region 2 domain protein; Sigma-70, region 4 type 2; KEGG: sth:STH3113 RNA polymerase sigma-70 factor.
  
    0.499
Amet_4592
TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R.
 
   
 0.498
Amet_2219
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC.
  
  
 0.495
Amet_4224
PFAM: Stage V sporulation AD family protein; KEGG: gka:GK0854 stage V sporulation protein SpoVAD.
  
  
 0.489
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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