STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1463PFAM: protein of unknown function DUF134; KEGG: dsy:DSY3441 hypothetical protein; Belongs to the UPF0251 family. (116 aa)    
Predicted Functional Partners:
Amet_1464
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: tte:TTE1893 hypothetical protein.
  
 0.992
Amet_1466
Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3439 hypothetical protein.
 
     0.934
Amet_1465
Cobyrinic acid a,c-diamide synthase; PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; Cobyrinic acid a,c-diamide synthase; KEGG: dsy:DSY3440 hypothetical protein.
 
     0.932
Amet_1467
PFAM: Dinitrogenase iron-molybdenum cofactor biosynthesis protein; KEGG: dsy:DSY3437 hypothetical protein.
 
  
 0.932
Amet_1418
PFAM: beta-lactamase domain protein; KEGG: cpf:CPF_1168 metallo-beta-lactamase family protein.
 
     0.721
Amet_1468
KEGG: mka:MK0529 HAD family hydrolase, a fragment.
 
     0.610
Amet_1462
KEGG: swo:Swol_2181 peroxiredoxin-like protein.
       0.470
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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