STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1500KEGG: nca:Noca_2212 putative ABC antibiotics transporter. (532 aa)    
Predicted Functional Partners:
Amet_1501
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: rha:RHA1_ro06063 probable ABC transporter, ATP-binding component.
 
  
 0.960
Amet_1502
Transcriptional regulator, TetR family; PFAM: regulatory protein, TetR; KEGG: dsy:DSY3670 hypothetical protein.
 
     0.726
Amet_4739
PFAM: extracellular solute-binding protein, family 1; KEGG: dsy:DSY1083 hypothetical protein.
  
     0.626
Amet_3904
PFAM: ABC-2 type transporter; KEGG: gka:GK0909 ABC transporter (permease).
  
  
 0.604
Amet_4745
PFAM: protein of unknown function DUF214; KEGG: smu:SMU.1093 putative ABC transporter, permease protein.
  
     0.575
Amet_1920
KEGG: mac:MA0852 bacitracin ABC transporter, permease protein.
 
     0.571
Amet_3905
TIGRFAM: daunorubicin resistance ABC transporter ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: gka:GK0910 ABC transporter (ATP-binding protein).
 
  
 0.570
Amet_1415
KEGG: mmp:MMP0794 hypothetical protein.
 
    0.562
Amet_3261
KEGG: pna:Pnap_4519 isoprenylcysteine carboxyl methyltransferase.
  
    0.497
Amet_4740
KEGG: dsy:DSY1081 hypothetical protein.
  
     0.495
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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