STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1513PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3210 hypothetical protein. (339 aa)    
Predicted Functional Partners:
Amet_1512
PFAM: extracellular solute-binding protein, family 5; KEGG: mma:MM2460 dipeptide/oligopeptide-binding protein.
 
 0.968
Amet_1514
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dsy:DSY3209 hypothetical protein.
  
 0.957
Amet_1515
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: dsy:DSY3208 hypothetical protein.
  
 0.939
Amet_3329
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pol:Bpro_4403 binding-protein-dependent transport systems inner membrane component.
  
 0.845
Amet_2063
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB3067 oligopeptide ABC transporter permease.
  
 0.833
Amet_2047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 dipeptide transport system permease protein dppC.
  
 0.832
Amet_2913
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: cpr:CPR_2256 oligopeptide ABC transporter, permease component.
  
 0.832
Amet_1118
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM3320 oligopeptide transporter, permease protein.
  
 0.831
Amet_2006
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1112 dipeptide transport system permease protein dppC.
  
 0.831
Amet_1878
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN0398 dipeptide transport system permease protein dppC.
  
 0.830
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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