STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1556TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: cth:Cthe_1762 efflux transporter, RND family, MFP subunit. (442 aa)    
Predicted Functional Partners:
Amet_1554
PFAM: protein of unknown function DUF214; KEGG: ctc:CTC00486 ABC transporter permease protein.
 
  
 0.972
Amet_1555
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dsy:DSY3656 hypothetical protein.
 
 
 0.945
Amet_0712
PFAM: S-layer domain protein; Lytic transglycosylase, catalytic; KEGG: dsy:DSY3348 hypothetical protein.
 
 
 0.753
Amet_0600
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: biotin/lipoyl attachment domain-containing protein; secretion protein HlyD family protein; KEGG: dsy:DSY1327 hypothetical protein.
  
     0.724
Amet_3631
TIGRFAM: efflux transporter, RND family, MFP subunit; KEGG: dsy:DSY3360 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.697
Amet_0362
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.694
Amet_0282
TIGRFAM: efflux transporter, RND family, MFP subunit; PFAM: secretion protein HlyD family protein; KEGG: dsy:DSY3360 hypothetical protein; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
 
  
 0.674
Amet_0186
KEGG: swo:Swol_0134 hypothetical protein.
  
 
 0.658
Amet_0190
PFAM: Spore coat protein CotH; KEGG: cth:Cthe_0239 cellulosome enzyme, dockerin type I.
  
 
 0.655
Amet_1032
TIGRFAM: ABC-type bacteriocin transporter; PFAM: ABC transporter, transmembrane region; ABC transporter related; peptidase C39, bacteriocin processing; SMART: AAA ATPase; KEGG: cpr:CPR_1082 bacteriocin ABC transporter, ATP-binding/permease protein, putative.
  
 
 0.651
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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