STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1573TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: wsu:WS0964 hypothetical protein. (381 aa)    
Predicted Functional Partners:
Amet_1165
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: GAF domain protein; metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0038 response regulators consisting of a CheY-like receiver domain and an HD-GYP domain.
 
 0.944
Amet_3700
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; SMART: metal-dependent phosphohydrolase, HD region; KEGG: tte:TTE0518 HD-GYP domain.
 
 0.929
Amet_1518
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: btl:BALH_1732 DNA-binding response regulator.
 
 
    0.902
Amet_3087
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: tte:TTE1633 response regulators consisting of a CheY-like receiver domain and a HTH DNA-binding domain.
 
 
    0.902
Amet_0771
PFAM: metal-dependent phosphohydrolase, HD sub domain; Metal-dependent hydrolase HDOD; KEGG: ctc:CTC01693 hypothetical protein.
      0.899
Amet_2925
Diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s); TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; EAL domain protein; SMART: PAS domain containing protein; KEGG: cth:Cthe_0408 diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s).
 
 0.880
Amet_4758
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: cth:Cthe_2333 two component transcriptional regulator, winged helix family.
 
 
    0.880
Amet_0752
TIGRFAM: metal dependent phophohydrolase; PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0853 HD superfamily hydrolase (HD-GYP domain).
 
 
 0.872
Amet_1705
PFAM: metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: cac:CAC0277 HD-GYP hydrolase domain containing protein.
 
 0.834
Amet_1274
PFAM: GAF domain protein; metal-dependent phosphohydrolase, HD sub domain; SMART: metal-dependent phosphohydrolase, HD region; KEGG: syn:slr2100 two-component response regulator.
  
 0.831
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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