STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1604KEGG: cth:Cthe_2773 integrase, catalytic region. (184 aa)    
Predicted Functional Partners:
Amet_1605
KEGG: cth:Cthe_0590 transposase IS3/IS911.
 
     0.934
Amet_1315
KEGG: dsy:DSY4612 hypothetical protein.
  
     0.769
Amet_1612
Transposase, mutator type; Required for the transposition of the insertion element.
 
     0.583
Amet_4732
PFAM: transposase IS3/IS911 family protein; KEGG: bha:BH3445 transposase (05).
 
  
 0.535
Amet_1499
PFAM: transposase, IS4 family protein; KEGG: swo:Swol_2451 hypothetical protein.
  
     0.508
Amet_1528
PFAM: transposase, IS204/IS1001/IS1096/IS1165 family protein; KEGG: gka:GK2252 transposase.
 
     0.500
Amet_3897
Hypothetical protein; KEGG: sat:SYN_03180 transposase and inactivated derivatives.
 
   
 0.477
Amet_1608
PFAM: restriction modification system DNA specificity domain; KEGG: lin:lin0523 hypothetical protein.
 
     0.447
Amet_1606
Hypothetical protein.
       0.419
Amet_1524
PFAM: transposase, IS111A/IS1328/IS1533; KEGG: gka:GK3301 transposase.
 
  
 0.405
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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