STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1623PFAM: Abortive infection protein; KEGG: tte:TTE2577 predicted metal-dependent membrane protease. (334 aa)    
Predicted Functional Partners:
Amet_1622
TIGRFAM: amidohydrolase; PFAM: peptidase M20; peptidase dimerisation domain protein; KEGG: syf:Synpcc7942_0256 peptidase M20D, amidohydrolase.
  
    0.718
Amet_4763
TIGRFAM: primosome, DnaD subunit; PFAM: DnaD and phage-associated region; KEGG: ctc:CTC00124 DNA replication protein DnaD.
  
     0.671
Amet_4136
Hypothetical protein; KEGG: tte:TTE0116 S-layer homology domain.
  
     0.555
Amet_1725
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: cpr:CPR_1840 TPR domain protein.
  
    0.552
Amet_0139
KEGG: ctc:CTC00249 hypothetical protein.
  
     0.534
Amet_2228
PFAM: NUDIX hydrolase; KEGG: tte:TTE1129 NTP pyrophosphohydrolase including oxidative damage repair enzyme.
  
     0.531
Amet_4782
KEGG: cth:Cthe_2712 hypothetical protein.
  
     0.496
Amet_1624
KEGG: aci:ACIAD0613 conserved hypothetical protein; putative phospholipase D endonuclease domain.
       0.494
Amet_4755
KEGG: sep:SE0020 hypothetical protein.
  
     0.486
Amet_0344
KEGG: gme:Gmet_3357 hypothetical protein.
  
     0.481
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.