STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1669PFAM: NADPH-dependent FMN reductase. (347 aa)    
Predicted Functional Partners:
Amet_1670
Malate/lactate dehydrogenase-like protein; KEGG: llm:llmg_1429 L-lactate dehydrogenase.
 
  
 0.967
Amet_1671
PFAM: cytidylyltransferase.
 
     0.958
Amet_0180
PFAM: cell surface receptor IPT/TIG domain protein; Fibronectin, type III domain protein; KEGG: tte:TTE0165 hypothetical protein.
  
     0.592
Amet_4755
KEGG: sep:SE0020 hypothetical protein.
  
     0.590
Amet_0511
Catalase; Serves to protect cells from the toxic effects of hydrogen peroxide.
  
  
 0.581
Amet_4072
PFAM: transcriptional activator domain; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: ctc:CTC02319 serine/threonine kinase, putative regulatory protein.
  
     0.551
Amet_0487
PFAM: OmpA/MotB domain protein; KEGG: cjj:CJJ81176_0627 chemotaxis protein MotB, putative.
  
     0.543
Amet_2712
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
  
     0.535
Amet_3466
PFAM: Ferritin, Dps family protein; KEGG: fnu:FN1079 neutrophil-activating protein A; Belongs to the Dps family.
  
  
 0.517
Amet_0486
KEGG: cth:Cthe_0320 hypothetical protein.
  
     0.516
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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