STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1833Peptidase C26; PFAM: glutamine amidotransferase class-I; peptidase C26; KEGG: cac:CAC1764 predicted glutamine amidotransferase. (238 aa)    
Predicted Functional Partners:
Amet_0477
PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog.
     0.916
Amet_3077
PFAM: peptidase M19, renal dipeptidase; KEGG: tko:TK2040 microsomal dipeptidase homolog.
     0.915
Amet_1882
PFAM: peptidase M19, renal dipeptidase; KEGG: tte:TTE2129 Zn-dependent dipeptidase, microsomal dipeptidase homolog.
      0.904
Amet_1834
PFAM: permease; KEGG: mhu:Mhun_0864 permease.
       0.705
Amet_1181
PFAM: protein of unknown function DUF156; KEGG: tte:TTE1664 hypothetical protein.
   
    0.475
Amet_3015
PFAM: protein of unknown function DUF156; KEGG: dsy:DSY0389 hypothetical protein.
   
    0.475
Amet_4636
Glutamate--cysteine ligase; Catalyzes the synthesis of gamma-glutamylcysteine (gamma-GC). Belongs to the glutamate--cysteine ligase type 2 family. EgtA subfamily.
 
      0.462
Amet_1832
Hypothetical protein.
       0.457
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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