STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_1840PFAM: permease; KEGG: mhu:Mhun_0862 permease. (226 aa)    
Predicted Functional Partners:
Amet_1231
TIGRFAM: redox-active disulfide protein 2; KEGG: chy:CHY_1096 redox-active disulfide protein 2.
 
  
 0.730
Amet_1841
PFAM: regulatory protein, ArsR; KEGG: dsy:DSY4679 hypothetical protein.
  
  
 0.664
Amet_1839
PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster.
       0.647
Amet_1838
TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function.
       0.556
Amet_1659
Nitroreductase; KEGG: pca:Pcar_2755 nitroreductase.
  
     0.445
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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