STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2010Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein. (251 aa)    
Predicted Functional Partners:
Amet_1123
PFAM: Succinylglutamate desuccinylase/aspartoacylase; KEGG: ssa:SSA_0496 succinylglutamate desuccinylase / aspartoacylase family, putative.
 
     0.913
Amet_2007
PFAM: extracellular solute-binding protein, family 5; KEGG: fnu:FN1111 dipeptide-binding protein.
 
    0.884
Amet_2008
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1524 dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
  
    0.774
Amet_2009
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1525 dipeptide transport ATP-binding protein dppF; Belongs to the ABC transporter superfamily.
  
    0.774
Amet_2005
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB.
 
    0.695
Amet_2006
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1112 dipeptide transport system permease protein dppC.
  
    0.625
Amet_1119
PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative.
 
    0.594
Amet_3339
Cytochrome P450 family protein; YBDT Bacillus subtilis ortholog; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog.
   
 
 0.514
birA
biotin--acetyl-CoA-carboxylase ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.508
Amet_2045
PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative.
 
    0.493
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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