STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2011TIGRFAM: cysteine desulfurase family protein; PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: mta:Moth_2214 cysteine desulphurase related, unknown function. (382 aa)    
Predicted Functional Partners:
Amet_2454
PFAM: nitrogen-fixing NifU domain protein; KEGG: cth:Cthe_0721 nitrogen-fixing NifU-like protein.
  
 0.924
Amet_2012
PFAM: Fe-S cluster domain protein; KEGG: mta:Moth_2213 putative Fe-S cluster.
 
     0.765
Amet_2205
PFAM: aminotransferase, class V; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: cpf:CPF_1667 aminotransferase, class V.
 
  
0.605
iscS
Aminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily.
 
  
0.592
Amet_3039
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: oih:OB1305 hypothetical protein.
    
   0.588
Amet_0027
PFAM: SirA family protein; KEGG: swo:Swol_1887 SirA-like protein; Belongs to the sulfur carrier protein TusA family.
 
 
 
 0.585
Amet_0028
KEGG: tte:TTE1677 hypothetical protein.
 
   
 0.567
fdhD
Formate dehydrogenase family accessory protein FdhD; Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH. Belongs to the FdhD family.
   
  0.520
Amet_2010
Methyltransferase type 11; PFAM: UbiE/COQ5 methyltransferase; Tellurite resistance protein TehB; Methyltransferase type 11; Methyltransferase type 12; KEGG: msu:MS0467 SmtA protein.
  
  
 0.444
Amet_2008
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter, C-terminal domain protein; SMART: AAA ATPase; KEGG: fnu:FN1524 dipeptide transport ATP-binding protein dppD; Belongs to the ABC transporter superfamily.
  
    0.419
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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