STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2045PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative. (507 aa)    
Predicted Functional Partners:
Amet_2047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 dipeptide transport system permease protein dppC.
 
 0.919
Amet_2046
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1113 dipeptide transport system permease protein dppB.
   0.912
Amet_2005
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB.
   0.813
Amet_1117
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1521 dipeptide transport system permease protein dppB.
   0.803
Amet_2006
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1112 dipeptide transport system permease protein dppC.
 
 0.801
Amet_1118
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mma:MM3320 oligopeptide transporter, permease protein.
 
 0.787
Amet_4721
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease.
   0.782
Amet_1132
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0985 nickel transport system permease.
   0.762
Amet_4720
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease.
 
 0.758
Amet_1133
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: wsu:WS0986 oligopeptide ABC transporter permease.
 
 0.752
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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