STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2050KEGG: bha:BH2071 hypothetical protein. (274 aa)    
Predicted Functional Partners:
Amet_3397
PFAM: glutamine amidotransferase, class-II; glutamate synthase, alpha subunit domain protein; ferredoxin-dependent glutamate synthase; glutamate synthase; KEGG: cac:CAC1673 large subunit of NADH-dependent glutamate synthase.
  
  
 0.740
Amet_2051
KEGG: bha:BH2072 hypothetical protein.
       0.735
Amet_2046
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1113 dipeptide transport system permease protein dppB.
       0.714
Amet_2047
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: fnu:FN1522 dipeptide transport system permease protein dppC.
       0.714
Amet_2048
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sav:SAV0992 oligopeptide ABC transporter ATP-binding protein homologue.
       0.714
Amet_2049
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pmu:PM1906 oligopeptide transport ATP-binding protein.
       0.714
Amet_2052
Hypothetical protein.
  
 
 0.693
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
  
  
 0.662
Amet_2045
PFAM: extracellular solute-binding protein, family 5; KEGG: ssa:SSA_0493 ABC-type dipeptide/nickel transport system, periplasmic component, putative.
  
    0.606
Amet_2053
Histidyl-tRNA synthetase-like protein; KEGG: tpe:Tpen_0659 histidyl-tRNA synthetase.
       0.601
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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