STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2174PFAM: Radical SAM domain protein; SMART: Elongator protein 3/MiaB/NifB; KEGG: cac:CAC1421 pyruvate-formate lyase-activating enzyme. (284 aa)    
Predicted Functional Partners:
Amet_2173
PFAM: AMMECR1 domain protein; Extradiol ring-cleavage dioxygenase, class III protein, subunit B; KEGG: cac:CAC1420 protein with a fusion of two uncharacterized domains, typical for archaea.
 
     0.957
Amet_0506
TIGRFAM: pyruvate formate-lyase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cno:NT01CX_0385 pyruvate formate-lyase.
  
  
 0.494
Amet_0584
PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: gsu:GSU2101 formate acetyltransferase.
  
  
 0.494
Amet_1986
PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: pca:Pcar_0937 putative formate acetyltransferase.
  
  
 0.494
Amet_2211
TIGRFAM: formate acetyltransferase; PFAM: formate C-acetyltransferase glycine radical; pyruvate formate-lyase, PFL; KEGG: cya:CYA_0477 formate acetyltransferase.
  
  
 0.494
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
  
  
 0.494
Amet_1676
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cth:Cthe_3120 pyruvate flavodoxin/ferredoxin oxidoreductase-like protein.
     
 0.483
Amet_4657
PFAM: 4Fe-4S ferredoxin, iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: tte:TTE0445 Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit.
     
 0.445
Amet_2172
TIGRFAM: PAS sensor protein; diguanylate cyclase; PFAM: GGDEF domain containing protein; PAS fold-4 domain protein; PAS fold domain protein; KEGG: dar:Daro_2825 PAS:GGDEF.
  
    0.418
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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