STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2229PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: tte:TTE1130 hypothetical protein. (216 aa)    
Predicted Functional Partners:
Amet_2230
PFAM: CoA-binding domain protein; KEGG: tte:TTE1131 predicted CoA-binding protein.
       0.734
Amet_2228
PFAM: NUDIX hydrolase; KEGG: tte:TTE1129 NTP pyrophosphohydrolase including oxidative damage repair enzyme.
       0.577
Amet_2991
PFAM: protein of unknown function DUF633; KEGG: tte:TTE1754 predicted SAM-dependent methyltransferase.
   
    0.538
Amet_2235
PFAM: protein of unknown function DUF28; KEGG: cno:NT01CX_1819 hypothetical protein.
 
     0.453
Amet_3698
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; GAF domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: syf:Synpcc7942_2096 diguanylate cyclase (GGDEF domain).
   
   0.418
cinA
TIGRFAM: competence/damage-inducible protein CinA; PFAM: molybdopterin binding domain; CinA domain protein; KEGG: cac:CAC3586 competence-damage inducible protein, CINA; Belongs to the CinA family.
       0.400
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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