STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2416TIGRFAM: uncharacterized phage protein (possible DNA packaging); KEGG: cpr:CPR_C0011 uncharacterized phage protein (possible DNA packaging). (93 aa)    
Predicted Functional Partners:
Amet_2417
TIGRFAM: phage head-tail adaptor, putative.
  
 
 0.897
Amet_2419
Hypothetical protein.
       0.818
Amet_2418
KEGG: ctc:CTC02127 hypothetical protein.
       0.794
Amet_2420
KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK.
       0.794
Amet_2412
PFAM: phage portal protein; KEGG: bcz:BCZK3426 phage-related, head portal protein.
  
   0.793
Amet_2415
Hypothetical protein.
       0.773
Amet_2421
KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM.
       0.751
Amet_2422
Hypothetical protein.
       0.733
Amet_2413
TIGRFAM: phage prohead protease, HK97 family; PFAM: peptidase U35, phage prohead HK97; KEGG: lla:L55698 prophage pi2 protein 32.
     
 0.670
Amet_4030
TIGRFAM: phage portal protein, HK97 family; PFAM: phage portal protein; KEGG: det:DET1087 portal protein, HK97 family, putative.
  
   0.626
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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