STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2421KEGG: ctc:CTC02124 phage-like element pbsx protein XkdM. (147 aa)    
Predicted Functional Partners:
Amet_2420
KEGG: ctc:CTC02125 phage-like element pbsx protein XkdK.
 
   
 0.950
Amet_2427
Hypothetical protein; KEGG: ctc:CTC02117 phage-like element pbsx protein XkdQ.
 
     0.845
Amet_2431
KEGG: ctc:CTC02112 phage-like element pbsx protein XkdT.
 
     0.844
Amet_2429
Hypothetical protein; KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS.
 
     0.832
Amet_2430
PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT.
 
     0.832
Amet_2426
KEGG: dsy:DSY3953 hypothetical protein.
 
     0.823
Amet_2422
Hypothetical protein.
       0.795
Amet_2560
KEGG: ctc:CTC02116 phage-like element pbsx protein XkdS.
 
     0.792
Amet_2559
PFAM: Baseplate J family protein; KEGG: ctc:CTC02115 phage-like element pbsx protein XkdT.
 
     0.790
Amet_2568
KEGG: lin:lin1278 hypothetical protein.
 
   
 0.784
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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