STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2517KEGG: tte:TTE1306 hypothetical protein. (298 aa)    
Predicted Functional Partners:
Amet_2516
PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1305 hypothetical protein.
 
  
 0.978
Amet_2519
KEGG: tte:TTE1308 hypothetical protein.
 
     0.955
Amet_2518
PFAM: glycosyl transferase, family 2; KEGG: tte:TTE1307 glycosyltransferase involved in cell wall biogenesis.
 
     0.931
Amet_2520
KEGG: swo:Swol_0596 hypothetical protein.
 
     0.910
Amet_2460
KEGG: tte:TTE0101 hypothetical protein.
 
     0.790
Amet_4759
KEGG: tte:TTE2690 hypothetical protein.
  
     0.712
Amet_2864
KEGG: tte:TTE1626 hypothetical protein.
  
     0.672
Amet_2859
KEGG: tte:TTE1621 hypothetical protein.
  
     0.608
Amet_2894
TIGRFAM: Sporulation lipoprotein YhcN/YlaJ; KEGG: ctc:CTC01534 hypothetical protein.
  
     0.606
Amet_2491
KEGG: tte:TTE1282 hypothetical protein.
  
     0.605
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.