STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2620Cellulase; PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0443 Cellulase M and related proteins. (334 aa)    
Predicted Functional Partners:
Amet_2621
Cellulase; PFAM: peptidase M18, aminopeptidase I; peptidase M42 family protein; KEGG: tte:TTE0442 Cellulase M and related proteins.
 
   
0.966
Amet_2622
PFAM: peptidase M20; peptidase M42 family protein; KEGG: tte:TTE0441 Cellulase M and related proteins.
 
   
0.880
Amet_2623
Protein-glutamate O-methyltransferase; PFAM: MCP methyltransferase, CheR-type; KEGG: cth:Cthe_0717 MCP methyltransferase, CheR-type.
       0.492
Amet_2619
PFAM: regulatory protein, MerR; KEGG: cth:Cthe_0804 transcriptional regulator, MerR family.
       0.461
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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