STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2645TIGRFAM: Sporulation protein YtfJ; KEGG: tte:TTE1327 hypothetical protein. (149 aa)    
Predicted Functional Partners:
Amet_2646
KEGG: bsu:BG13848 hypothetical protein.
 
    0.956
Amet_2870
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
   
 0.765
Amet_2765
TIGRFAM: Sporulation integral membrane protein YlbJ; PFAM: nucleoside recognition domain protein; KEGG: cth:Cthe_1274 nucleoside recognition.
  
    0.762
Amet_2869
TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_0449 hypothetical protein.
  
  
 0.751
Amet_2224
TIGRFAM: Sporulation protein YunB; KEGG: tte:TTE1683 hypothetical protein.
  
   
 0.749
Amet_2496
TIGRFAM: Sporulation stage III, protein AE; KEGG: bha:BH2793 mutants block sporulation after engulfment.
  
     0.742
Amet_2512
TIGRFAM: Peptidase S55, sporulation stage IV, protein B; PFAM: peptidase S55, SpoIVB; KEGG: tte:TTE1303 sporulation protein IVB.
  
    0.733
Amet_2663
PFAM: peptidase S14, ClpP; KEGG: tte:TTE1381 protease subunit of ATP-dependent Clp protease.
  
    0.728
Amet_1285
PFAM: GerA spore germination protein; KEGG: cac:CA_P0020 spore germination protein, GrkA.
  
     0.717
Amet_4592
TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R.
  
     0.716
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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