STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2772PFAM: protein of unknown function DUF322; KEGG: cno:NT01CX_2234 alkaline shock protein, putative. (118 aa)    
Predicted Functional Partners:
Amet_2771
PFAM: Dak phosphatase; KEGG: cpr:CPR_1703 DAK2 domain protein.
 
  
 0.990
recG
ATP-dependent DNA helicase RecG; Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y- DNA); Belongs to the helicase family. RecG subfamily.
       0.690
Amet_3123
PFAM: Lytic transglycosylase, catalytic; KEGG: cac:CAC1100 secreted protein, similar to catalytic domain of murein transglycosylase.
   
    0.633
rpmB
PFAM: ribosomal protein L28; KEGG: cpr:CPR_1705 ribosomal protein L28; Belongs to the bacterial ribosomal protein bL28 family.
       0.604
Amet_3139
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: chy:CHY_2418 DegV family protein.
 
    0.559
Amet_3607
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: sth:STH524 hypothetical protein.
 
    0.549
Amet_2768
TIGRFAM: putative methyltransferase; PFAM: conserved hypothetical protein 95; KEGG: cth:Cthe_1277 putative methyltransferase.
  
    0.544
coaD
Pantetheine-phosphate adenylyltransferase; Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate. Belongs to the bacterial CoaD family.
       0.530
Amet_3597
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cno:NT01CX_0894 DegV family protein.
 
    0.527
Amet_0761
TIGRFAM: degV family protein; PFAM: DegV family protein; KEGG: cac:CAC1624 uncharacterized protein from DegV (B.subtilis) family.
 
    0.520
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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