STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2777PFAM: ribulose-phosphate 3-epimerase; KEGG: cth:Cthe_0576 ribulose-phosphate 3-epimerase. (220 aa)    
Predicted Functional Partners:
Amet_4648
TIGRFAM: transketolase; PFAM: Transketolase domain protein; Transketolase, central region; KEGG: ctc:CTC01332 transketolase; Belongs to the transketolase family.
 0.991
rsgA
Ribosome small subunit-dependent GTPase A; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily.
 
    0.985
Amet_0338
TIGRFAM: sugar-phosphate isomerase, RpiB/LacA/LacB family; ribose 5-phosphate isomerase B; PFAM: Ribose/galactose isomerase; KEGG: cpr:CPR_2173 ribose 5-phosphate isomerase B.
 
 
 0.973
xylB-2
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase.
 
 
 0.969
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase, FGGY; KEGG: mta:Moth_2025 xylulokinase.
 
 
 0.950
Amet_2782
Sun protein; Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA.
 
 
 0.914
Amet_3469
TIGRFAM: 6-phosphogluconate dehydrogenase, decarboxylating; PFAM: 6-phosphogluconate dehydrogenase domain protein; 6-phosphogluconate dehydrogenase, NAD-binding; KEGG: mta:Moth_1283 6-phosphogluconate dehydrogenase related protein.
    
 0.909
Amet_2779
PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: cth:Cthe_0574 serine/threonine protein kinase.
 
  
 0.878
Amet_1262
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
  
 0.869
Amet_2776
TIGRFAM: thiamine pyrophosphokinase; PFAM: Thiamin pyrophosphokinase, catalytic region; KEGG: tte:TTE1497 thiamine pyrophosphokinase.
  
  
 0.856
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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