STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2823PFAM: protein of unknown function DUF477; KEGG: tma:TM0962 hypothetical protein. (300 aa)    
Predicted Functional Partners:
Amet_2824
PFAM: LemA family protein; KEGG: sat:SYN_00535 LemA family protein.
 
  
 0.947
Amet_4659
KEGG: bha:BH1562 hypothetical protein.
    
   0.832
Amet_4663
PFAM: Rieske [2Fe-2S] domain protein; FAD dependent oxidoreductase; KEGG: cth:Cthe_1461 FAD dependent oxidoreductase.
  
   0.823
Amet_4517
Superoxide dismutase, copper/zinc binding; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the Cu-Zn superoxide dismutase family.
  
 
   0.607
Amet_1351
KEGG: cpe:CPE1290 hypothetical protein.
  
  
 0.577
Amet_1371
KEGG: cth:Cthe_2090 hypothetical protein.
  
  
 0.577
flhB
Flagellar biosynthetic protein FlhB; Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin; Belongs to the type III secretion exporter family.
    
 
 0.510
Amet_2705
Flagellar biosynthetic protein FliR; Role in flagellar biosynthesis. Belongs to the FliR/MopE/SpaR family.
    
 
 0.491
fliQ
Flagellar biosynthetic protein FliQ; Role in flagellar biosynthesis. Belongs to the FliQ/MopD/SpaQ family.
    
 
 0.491
Amet_0608
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
    
   0.420
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
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