STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amet_2869TIGRFAM: Sporulation protein YlmC/YmxH; PFAM: PRC-barrel domain protein; KEGG: cth:Cthe_0449 hypothetical protein. (98 aa)    
Predicted Functional Partners:
Amet_2870
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.914
Amet_2871
RNA polymerase, sigma 28 subunit, FliA/WhiG family; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
 
     0.895
Amet_2872
Peptidase U4, sporulation factor SpoIIGA; Probable aspartic protease that is responsible for the proteolytic cleavage of the RNA polymerase sigma E factor (SigE/spoIIGB) to yield the active peptide in the mother cell during sporulation. Responds to a signal from the forespore that is triggered by the extracellular signal protein SpoIIR. Belongs to the peptidase U4 family.
 
   
 0.861
Amet_4592
TIGRFAM: Sporulation stage II, protein R; KEGG: cth:Cthe_1920 stage II sporulation protein R.
 
     0.835
Amet_2854
Sporulation stage IV, protein A; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
 
     0.803
Amet_2219
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: tte:TTE1319 spore formation protein spoVAC.
  
    0.797
Amet_4225
TIGRFAM: Sporulation stage V, protein AC; PFAM: SpoVA protein; KEGG: btl:BALH_4637 stage V sporulation protein AC.
  
    0.788
Amet_2492
TIGRFAM: Sporulation stage III, protein AA; SMART: AAA ATPase; KEGG: cth:Cthe_0845 stage III sporulation protein spoIIIAA.
  
    0.778
Amet_2663
PFAM: peptidase S14, ClpP; KEGG: tte:TTE1381 protease subunit of ATP-dependent Clp protease.
 
     0.777
Amet_2495
TIGRFAM: Sporulation stage III, protein AD; KEGG: cth:Cthe_0842 stage III sporulation protein AD.
  
     0.772
Your Current Organism:
Alkaliphilus metalliredigens
NCBI taxonomy Id: 293826
Other names: A. metalliredigens QYMF, Alkaliphilus metalliredigens QYMF, Alkaliphilus metalliredigens str. QYMF, Alkaliphilus metalliredigens strain QYMF
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.